Here is a collection of links to publications and websites that address best practices for sharing high-throughput biomedical or "omics" data sets. This listing is not necessarily comprehensive! If you know of a relevant resource not listed here, Contact us.
Resources:
- FGED Projects - FGED Society's efforts to define what should be shared
- BioSharing - Registry of standards, databases, and data sharing policies
- FAIR Data - Data guiding principles: findable, accessible, interoperable, reusable
- ISA Commons - Metadata tracking framework
- MIBBI - Minimum Information for Biological and Biomedical Investigations - a minimum information standards portal
- OBO Foundry - Open Biological and Biomedical Ontologies
Publications:
- GA4GH: A federated ecosystem for sharing genomic, clinical data (2016)
- Biomedical Data Sharing and Reuse: Attitudes and Practices of Clinical and Scientific Research Staff (2015)
- Best Practices for Data Sharing in Phylogenetic Research (2014)
- Data sharing policy design for consortia: challenges for sustainability (2014)
- Ten Simple Rules for Reproducible Computational Research (2013)
- Open Access Science, Wellcome Trust Sanger Institute
Challenges:
- Software archivability: How I learned to stop worrying and love the coming archivability crisis in scientific software (C. Titus Brown, 11 Jan 2017)